PancCanNet workshop

Workshop 2: Analysis workflows

Date: 9 September 2021
Organizer: Martina Summer-Kutmon

Preparation
Follow the installation instruction to make sure you have all required software installed.

Description
In this workshop, we will use the developed PancCanNet workflows to showcase how to analyse molecular data using the pathway knowledge in WikiPathways and the PancCanNet community portal. The aim is to provide more detailed information about the molecular mechanisms and support interpretation with advanced visualizations.

Program

Title	Link
Introduction workflows	Slides
Workflow 1 - Pathway enrichment	workflow
Workflow 2 - PPI network	workflow
Workflow 2b - PPI network	workflow
Workflow 3 - Network diffusion analysis	workflow

For each workflow:

In the top right, select “Code” > “Download Rmd” file and open the file in RStudio.
Download and unzip data.zip file in the same folder as the Rmd file.

Cytoscape introduction</br> If you are not yet familiar with Cytoscape, you can also follow the following introduction. If more people are interested, then I can go through this before the workflows.