Please install the following tools (available on all platforms):
Install required R-packages
If you start RStudio, you can run the following code to install the required packages:
install.packages("BiocManager")
BiocManager::install("RCy3")
BiocManager::install("rWikiPathways")
BiocManager::install("clusterProfiler")
BiocManager::install("org.Hs.eg.db")
BiocManager::install("RColorBrewer")
BiocManager::install("EnhancedVolcano")
BiocManager::install("dplyr")
BiocManager::install("tidyverse")
BiocManager::install("clusterProfiler")
BiocManager::install("igraph")
install.packages("rstudioapi")
install.packages("readr")
install.packages("data.table")
Contact
Feel free to contact us in case you have problems installing the software or packages (ideally before the workshop!).